PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2202_p4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 351aa    MW: 37292.4 Da    PI: 6.7885
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2202_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.91.6e-121922311155
                 HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 rRR+riN+++  L++l+P++      K +Ka++L +A+eY+k+Lq
  RrC2202_p4 192 RRRSRINEKMKALQSLIPNS-----NKTDKASMLDEAIEYLKQLQ 231
                 8******************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.15E-16174241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.84E-15177235No hitNo description
Gene3DG3DSA:4.10.280.101.4E-15177241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-12180236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.805181230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.5E-10192231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MADKKLISSP SSTTSIYDTR SSNSNHHHYP PSSSDEISLF LRHIIDRSSP LPSYYSPATM  60
TTAVHGEPHA GNSICFVSPQ TSKRSADFSE VLVGSGVGSS SAAACYGFSG GGGGGNNIAQ  120
GNSSGTRVSS SSVGASGNET DEYDCESEEG VEAVVDDELP SKSGPSRSSS KRCRAAEVHN  180
LSEKTQANIL LRRRSRINEK MKALQSLIPN SNKTDKASML DEAIEYLKQL QLQVQMLSMR  240
NGINLHPLCL PGTALHPLQL SQLRPGVPPE ATNDSLLNAP AMINTGASSY ALEPSIRSHF  300
GPFPLLTSPV EMSCEGGLTH PRLNIGHSNT NLNGGQAAFN GQQPDIKDRL T
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9210901e-129KF921090.1 Brassica oleracea var. capitata bHLH transcription factor SPT mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013686106.10.0PREDICTED: transcription factor SPATULA-like isoform X2
SwissprotQ9FUA41e-143SPT_ARATH; Transcription factor SPATULA
TrEMBLA0A078GCN80.0A0A078GCN8_BRANA; BnaC03g61610D protein
STRINGBra010591.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41992754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.11e-123bHLH family protein